Reference Overview - PMID21984974

Overview

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Reference

Temporal Dissection of Tumorigenesis in Primary Cancers.

Paper Id
COSP27348
Authors
Durinck S,Ho C,Wang NJ,Liao W,Jakkula LR,Collisson EA,Pons J,Chan SW,Lam ET,Chu C,Park K,Hong SW,Hur JS,Huh N,Neuhaus IM,Yu SS,Grekin RT,Mauro TM,Cleaver JE,Kwok PY,Leboit PE,Getz G,Cibulskis K,Aster JC,Huang H,Purdom E,Li J,Bolund L,Arron ST,Gray JW,Spellman PT and Cho RJ
Affiliation
Life Sciences Division, Lawrence Berkeley National Laboratories, CA.
Journal
Cancer discovery 2011;1(2):137-143
ISSN:2159-8290
PUBMED:21984974
Abstract
Timely intervention for cancer requires knowledge of its earliest genetic aberrations. Sequencing of tumors and their metastases reveals numerous abnormalities occurring late in progression. A means to temporally order aberrations in a single cancer, rather than inferring them from serially acquired samples, would define changes preceding even clinically evident disease. We integrate DNA sequence and copy number information to reconstruct the order of abnormalities as individual tumors evolve for two separate cancer types. We detect vast, unreported expansion of simple mutation sharply demarcated by recombinative loss of the second copy of TP53 in cutaneous squamous cell carcinomas (cSCCs) and serous ovarian adenocarcinomas, in the former surpassing 50 mutations per megabase. In cSCCs, we also report diverse secondary mutations in known and novel oncogenic pathways, illustrating how such expanded mutagenesis directly promotes malignant progression. These results reframe paradigms in which TP53 mutation is required later, to bypass senescence induced by driver oncogenes.
Paper Status
Curated
Genes Analysed
4794
Mutations
6895

Mutations

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Genes Samples CDS Mutation AA Mutation

Non-Mutant Genes

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Non-Mutant Genes Gene Id (COSG)

Non-Mutant Samples

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Non-Mutant Samples Sample Id (COSS)

Mutated Samples

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Sample Name Mutation Count

Non-Coding mutation

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Sample ID Sample Name ID NCV Annotation Zygosity Chromosome Genome start Genome stop Genome version Strand WT seq Mut seq