This tab shows genes with mutations in the selected study/paper
|Genes ||Samples ||CDS Mutation ||AA Mutation |
This tab shows non coding variant in the selected study/paper
This tab shows the gene expression and copy number variation data for this study
The table currently shows all copy number data. This includes non-numeric data with descriptive definitions of gain/loss.
To Include only high value (numeric) copy number data, please click here. For more detailed information about copy number data and gain/loss definitions click here.
||Expr Level (Z-Score)
Over Expressed; Z-Score > 2.0
Under Expressed; Z-Score < -2.0
Normal; Z-Score within the range -2.0 to 2.0
||CN Segment Posn.
1. N/A represents cases where the average ploidy value is not available( mostly ICGC samples). For some TCGA samples where the minor allele information is not available the average ploidy value could not be calculated.
2. For TCGA samples, the ASCAT algorithm was used to calculate the average ploidy.
3. For CGP samples, the PICNIC algorithm was used to calculate the average ploidy.
This table lists the samples in the selected study which have low/high methylation for each gene.
||Methylation (no. samples)
This tab shows the fusion mutations observed in this sample