This tab shows an overview of the selected study/paper [more details]
Study
Glioblastoma Multiforme (TCGA) data import from ICGC
Study Id
COSU329
Description
The International Cancer Genome Consortium is a global effort with the primary goal of generating and freely distributing a comprehensive catalogue of the genomic abnormalities underlying 50 different cancer types. All the validated Simple Mutations in this release have been recovered from the Data Coordination Center (DCC) and curated into COSMIC.

In 2008, The Cancer Genome Atlas (TCGA) announced their first results of screening 91 Glioblastoma tumours through a set of 601 candidate genes (Pubmed), with an additional data release some months later on the TCGA data portal. This study comprises additional mutation data from these samples, after the initial two pilot phases of this project.
Genes Analysed
332
Mutated Samples
139
Total No. of Samples
139
This tab shows genes with mutations in the selected study/paper [more details]
Genes Samples CDS Mutation AA Mutation
This tab shows genes without mutations in the selected study/paper [more details]
Non-Mutant Genes Gene Id (COSG)
This tab shows samples without mutations in the selected study/paper [more details]
Non-Mutant Samples Sample Id (COSS)
This tab shows mutated samples in the selected study/paper [more details]
Sample Name Mutation Count
This tab shows non coding variant in the selected study/paper [more details]
Sample ID Sample Name ID NCV Annotation Zygosity Chromosome Genome start Genome stop Genome version Strand WT seq Mut seq
This tab shows the copy number variation data for this study. Only variants (classified as gain or loss) are listed. [more details]
CNV Gene Sample Position Minor Allele Copy Number Average Ploidy

1. N/A represents cases where average ploidy value is not available( mostly ICGC samples). For some TCGA samples where minor allele information is not available the average ploidy value could not be calculated.

2. For TCGA samples, Ascat algorithm is used to calculate the average ploidy.

3. For CGP samples, Picnic algorithm is used to calculate the average ploidy.

Type
This tab shows a table of count of samples having gain or loss for all genes [more details]
Gene Gain Samples Loss Samples Samples Tested
This tab shows the fusion mutations observed in this sample [more details]
Gene Sample Name Id Sample(COSS) CDS Mutation Somatic status Zygosity Validated Type